Bettina Heise - Publications

Journal papers as principal author:
 

• Heise, B., Haeuser, S., et al. (2012) submitted

• Heise, B., Schausberger, S.E., Stifter, D., Coherence Probe Microscopy Contrast Modification and Image Enhancement, 

       Imaging & Microscopy, Issue 2, (2012) ,  http://www.imaging-git.com/magazine
 

• Heise, B., Wiesauer, K., Goetzinger, E., Pircher, M., Hitzenberger, C.K., Engelke, R., Ahrens, G., Gruetzner, G., Stifter, D.:Spatially Resolved Stress Measurements in Materials with Polarisation-Sensitive Optical Coherence Tomography: Image Acquisition and Processing Aspects. J. Strain, 46(2010),61-68,                                  published online:  DOI 10.1111/j.1475-1305.2008.00589.x

• Heise, B., Sifter, D.:
  Quantitative phase reconstruction for orthogonal-scanning differential phase-contrast optical coherence tomography,
  Opt. Letters, 34(2009), 1306-1308.

• Heise, B., Sonnleitner, A., Klement, E.P.:
  DIC image reconstruction on large cell scans,
  J. Microscopy Research and Technique, 66(2005),  312-320.
   

Publications as co-author:

• V. Schlager, S.E. Schausberger, D.Stifter, B.Heise: Coherence Probe Microscopy Imaging and Analysis for Fiber-Reinforced Polymers, Springer LNCS (2011) 424-34.

• Stifter David; Leiss-Holzinger Elisabeth; Major Zoltan; et al. Dynamic optical studies in materials testing with spectral-domain polarization-sensitive optical coherence tomography, 18(25) (2010).
   

• Wolinski, H., Petrovic, U., Mattiazzi, M., Petschnigg, J., Heise, B., Natter, K., Kohlwein, S.D.:
  Imaging-based live cell yeast screen identifies novel factors involved in peroxisome assembly.
  J. of Proteome Research, 8(1) (2009), pp. 20-27, PMID: 19118449.
   
• Kuijper, A., Heise, B., Muresan, L., eds.:
  32nd annual workshop of the Austrian Association for Pattern Recognition (OAGM/AAPR), OEAGM08, OCG vol. 232, 2008, ISBN 978-3-85403-232-8.

• Schwarzenbacher, M., Kaltenbrunner, M., Brameshuber, M., Hesch, C., Paster, W., Weghuber, J., Heise, B., Sonnleitner, A. Stockinger, H., Schütz, G. J.:
  Micropatterning for quantitative analysis of protein-protein interactions in living cells
  Nat. Methods, 5 (2008), pp. 1053-1060, DOI: 10.1038/nmeth.1268.

• Zhou, Y., Kuijper, A., Heise, B., He, L.:
  Cell Segmentation Using the Level Set Method.
  Technical Reports RICAM, no. 2007-17, 2007.
  http://www.ricam.oeaw.ac.at/publications/reports/07/rep07-17.pdf

• Wolinski, H., Petrovic, U., Mattiazzi, M., Petschnigg, J., Heise, B., Natter, K., Kohlwein, S.D.:
  Imaging-based live cell yeast screen identifies novel factors involved in peroxisome assembly.
  J. of Proteome Research, 8(1) (2009), pp. 20-27, PMID: 19118449.
   
• Kuijper, A., Heise, B., Muresan, L., eds.:
  32nd annual workshop of the Austrian Association for Pattern Recognition (OAGM/AAPR), OEAGM08, OCG vol. 232, 2008, ISBN 978-3-85403-232-8.

• Kuijper, A., Heise, B., Zhou, Y., He, L., Wolinski, H.: Segmentation of Clustered Cells in Microscopy images by geometric PDEs and Level sets. In: Paragios, N., Duncan, J., Ayache, N. (eds.): Handbook of Biomedical Imaging, accepted for publication 2008, ISBN 978-0-387-09748-0.

 
Proceedings:
 

• Arminger, B.R. Zagar, B.G., Heise, B.: Comparison of various algorithms for phase unwrapping in optical phase microscopy, In: Instrumentation and Measurement Technology Conference Proceedings, 2007. (IEEE IMTC Proceedings, 2007).ISBN 978-1-4244-0588-2. DOI 10.1109/IMTC.2007.379082.

• Heise, B., Arminger, B.R.:
  Phase-contrast measurement techniques: some aspects about phase microscopy and Schlieren imaging.
  PAMM, Proc. Appl. Math. Mech. 7, 2150031–2150032 (2007) / DOI 10.1002/pamm.200700891
   
• Kuijper, A., Heise, B., Zhou, Y.:
  Clustered Cell Segmentation - Based on Iterative Voting and the Level Set Method.
  In: Ranchordas, A., Helder, A. (eds.): Proc. 3rd International Conference on Computer Vision Theory and Applications
  (VISAPP, Funchal, Madeira, Portugal, 22-25 January 2008),
  Vol. I, pp. 307-314. ISBN 978-989-8111-21-0. http://www.visapp.org
   
• Moser, B.; Bauer, F.; Elbau, P.; Heise, B.; Schöner, H.:
  Denoising techniques for raw 3D data of TOF cameras based on clustering and wavelets.
  Proc. SPIE, 6805  (2008).
   
• Kuijper, A., Heise, B.:
  An Automatic Cell Segmentation Method for Differential Interference Contrast Microscopy.
  Proc. ICPR  (2008).
  http://figment.cse.usf.edu/~sfefilat/data/papers/WeAT8.22.pdf
   
• Schöner, H., Moser, B., Dorrington, A.A., Payne, A.D., Cree, M.J., Heise, B., Bauer, F.:
  A Clustering Based Denoising Technique for Range Images of Time of Flight Cameras.
  Proc.CIMCA (2008).
   
• Heise, B., Leiss-Holzinger, E., Stifter, D., Hitzenberger, Ch.K. et al.:
  Advanced Image Processing of Retardation Scans for PS-OCT.
  ECBO 2009, Proc. SPIE  7372 (2009).
   
• Stephani, H., Hermann, M., Wiesauer, K., Katletz, S., Heise, B.:
  Enhancing the interpretability of THz data through unsupervised classification 
  Proc. IMEKO XIX (2009).
• Stephani, H., Jonuscheit, J., Robiné, Ch., Heise, B.:
  Automatically Detecting Peaks in Terahertz Time-domain Spectroscopy,
   Proc.  ICPR  (2010).

• Stifter David; Leiss-Holzinger Elisabeth; Heise Bettina; et al. Spectral Domain Polarization Sensitive Optical Coherence Tomography at 1.55 mu m: Novel Developments and Applications for Dynamic Studies in Materials Science, Proc.SPIE 7889 (2011).

• Schausberger Stefan E.; Heise Bettina; Maurer Christian; et al., Contrast modification for ultra-high resolution low-coherence interference microscopy by Fourier-plane filtering, Proc. SPIE 8091 (2011).

•  Heise B.; Schausberger S. E.; Maurer C.; et al, Enhancing of Structures in Coherence Probe Microscopy Imaging, Proc. SPIE 8335,  (2012).

 
Conference Talks:

• Heise, B.:
  Image processing and object recognition / particle tracking.
  Summerschool GENAU, Litschau, Austria, 2003.
   
• Heise, B.:
  Image Processing on Fluorescence and DIC images for Microbiology.
  Innsbruck Medical University, Austria, September 2006.
   
• Zagar, B., Arminger, B.R., Heise, B.:
  Comparison of Various Approaches for Phase Reconstruction in Optical Phase Microscopy.
  13. SENSOR Kongress 2007 (26-28 May 2007, Nürnberg, Germany).
   
• Heise, B., Wurm, M., Wiesauer, K., Stifter, D.:
  Spectral Domain-OCT: Application Fields in Material Research.
  Institute of Photonic Technology Jena (IPHT Jena, Germany), March 2008.
   
• Heise, B., Leiss, E., Stifter, D.:
  Optical Coherence Tomography: Imaging and Image Processing aspects for Material Inspection Applications.
  Fraunhofer-Institut für Techno- und Wirtschaftsmathematik (ITWM Kaiserslautern, Germany), June 2008.
   
• Heise, B., Leiss-Holzinger, E., Stifter, D., Hitzenberger, Ch.K. et al.:
  Advanced Image Processing of Retardation Scans for PS-OCT.
  European Conferences on Biomedical Optics 2009 (ECBO 2009).
   
• Heise, B., Stifter, D.:
  Coherent Imaging Microscopy: Applications and Challenges.
  3rd International Workshop 3D Imaging. Fontainebleau 2010, submitted.